Gluten-Free Pumpkin Muffins

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Made with wholesome oat flour, these gluten-free pumpkin muffins are incredibly moist and full of classic pumpkin spice flavor. Tart cranberries and melty chocolate chips add the perfect contrast and take this easy fall recipe to a new level!

Close-up of a gluten-free pumpkin cranberry muffin on a cutting board with other muffins.

Quick Look at the Recipe

  • 🍽️ Flavor: Rich pumpkin spice contrasted with tart cranberries and chocolate.
  • ⏱️ Prep Time: 10 minutes
  • 🔥 Cook Time: 24 minutes
  • 🕒 Ready In: 1 hour and 6 minutes (including 30 minutes of resting time)
  • 👥 Servings: 12 muffins
  • 🥣 Main Ingredients: Oat flour, pumpkin puree, cranberries, chocolate chips
  • 📖 Dietary Info: Gluten-free, refined sugar-free option, dairy-free option
  • ❄️ Freezer Friendly: Yes!
  • 👩‍🍳 Tip: Yogurt is the special ingredient that adds a richer flavor and moist texture to these gluten-free muffins.
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What Makes these Gluten-Free Muffins Special?

  • Soft, moist texture that won’t spoil the secret that they’re gluten free!
  • Rich and complex flavor with plenty of warm pumpkin spice, tart cranberries, and sweet chocolate.
  • Healthier muffin recipe made with oat flour and a natural sweetener.
Labeled muffin ingredients on a wooden table with a cutting board and navy dish towel including apple cider vinegar, salt, spices, coconut sugar, chocolate chips, vanilla, baking soda, cranberries, yogurt, eggs, pumpkin puree, and oat flour.

Ingredients

  • Oat flour – Certified gluten free. It’s so easy to make your own oat flour or you can purchase it.
  • Pumpkin puree – Not pumpkin pie filling. This recipe uses 1 15-ounce can so you don’t have to waste any.
  • Coconut sugar – This is one of the best healthier sweeteners, and it adds a subtle warm flavor to these muffins. However, you can use brown sugar if you prefer.
  • Yogurt – The biggest secret to such moist muffins! Use plain unsweetened full-fat yogurt or thick non-dairy yogurt. I always make these muffins with my homemade yogurt.
  • Cranberries – Fresh or frozen both work great!
  • Chocolate chips (optional): I used semi-sweet, but dark chocolate chips would also be delicious! To make these muffins refined sugar-free, simply leave out the chocolate chips.

Tools Needed

  • Muffin pan – I love my stainless steel pan and have no issues with the muffins sticking when it’s greased.

Step-By-Step Instructions

Whisking batter in a bowl.

Step 1: First, in a large mixing bowl, whisk together the wet ingredients: pumpkin puree, yogurt, coconut sugar, eggs, apple cider vinegar, and vanilla.

Whisking dry ingredients in a bowl.

Step 2: Next, in another bowl, whisk together the oat flour, baking soda, cinnamon, nutmeg, ginger, cloves, and salt.

Stirring pumpkin batter.

Step 3: Then add the dry ingredients to the wet ingredients and stir until just combined.

Stirring cranberries and chocolate chips into batter.

Step 4: Gently fold in the cranberries and chocolate chips (if you’re including them). Then cover the bowl and place the batter in the fridge to rest for 30 minutes.

Muffins ready to be baked.

Step 5: Preheat your oven to 350 degrees and grease your muffin pan. Alternatively, you can line it with baking cups instead. Then evenly divide the batter between the muffin cups.

Bake for 24-28 minutes or until a toothpick inserted into the center of a muffin comes out mostly clean with a few moist crumbs.

Allow the muffins to cool for about 10 minutes before removing them from the pan.

Healthy pumpkin muffins on a cutting board with a pan with more muffins in the background.

If you’re looking for more gluten-free muffin recipes, check out my oat flour apple muffins and classic gluten-free banana muffins!

Tips for Success

Don’t over-mix – For soft, tender muffins, stir the batter until just combined. It’s better to slightly under-mix, so don’t worry if you still see a few tiny bits of flour. That will get stirred in when you fold in the cranberries and chocolate chips.

Allow time to rest – This is a huge key to moist oat flour baked goods!

Let cool in the pan – For perfectly done muffins that pop out of the pan cleanly, make sure to let them cool in the pan for about 10 minutes before removing them.

Gluten-free pumpkin cranberry muffins on a cutting board surrounded by chocolate chips and cranberries.

FAQs

How do I store gluten-free pumpkin muffins?

Store gluten-free pumpkin muffins on a plate wrapped in plastic wrap, in a gallon ziplock bag, or airtight container at room temperature for 3-5 days.

Can I freeze pumpkin muffins?

Yes, pumpkin muffins freeze wonderfully in an airtight container or plastic freezer bag for 2-3 months.

Can I use this recipe to make gluten-free pumpkin bread instead?

Yes, this pumpkin batter makes delicious bread! Simply divide between 2 bread pans and bake for 40-45 minutes. For detailed instructions, see my oat flour pumpkin bread recipe.

Can you use dried cranberries instead of fresh in pumpkin muffins?

Yes, you can use dried cranberries in pumpkin muffins, however, fresh cranberries are more flavorful and give the muffins a better texture.

Can I make healthy pumpkin cranberry muffins with another type of flour?

No, these pumpkin cranberry muffins are created specifically for oat flour, and other types of flour won’t create the same good result.

If you try this recipe, let me know in the comments! Tag me on Instagram @violet_rightathome

Close-up view of a gluten-free pumpkin muffin on a wooden surface.

Gluten-Free Pumpkin Muffins

These easy gluten-free pumpkin muffins with oat flour are so moist and full of classic pumpkin, cranberry, and chocolate flavor!
5 from 1 vote
Print Pin Rate
Course: Clean Eating Snacks
Cuisine: American
Prep Time: 10 minutes
Cook Time: 24 minutes
Resting Time: 30 minutes
Total Time: 1 hour 4 minutes
Servings: 12 muffins
Calories: 218kcal
Author: Violet Parcha

Equipment

Ingredients

  • 3 cups oat flour certified gluten free
  • 15 ounces pumpkin puree not pumpkin pie filling
  • 1 1/4 cups cranberries
  • 3/4 cup coconut sugar
  • 3 eggs
  • 1/3 cup yogurt dairy or non-dairy
  • 1 1/2 teaspoons baking soda
  • 1 1/2 teaspoons ground cinnamon
  • 1 teaspoon apple cider vinegar
  • 1 teaspoon nutmeg
  • 1 teaspoon vanilla extract
  • 1/4 teaspoon cloves
  • 1/4 teaspoon ground ginger
  • 1/4 teaspoon salt
  • 1/3 cup chocolate chips optional

Instructions

  • In a large mixing bowl, whisk together the pumpkin puree, yogurt, coconut sugar, eggs, apple cider vinegar, and vanilla.
    15 ounces pumpkin puree, 3/4 cup coconut sugar, 3 eggs, 1/3 cup yogurt, 1 teaspoon apple cider vinegar, 1 teaspoon vanilla extract
  • In another bowl, whisk together the oat flour, baking soda, cinnamon, nutmeg, ginger, cloves, and salt.
    3 cups oat flour, 1 1/2 teaspoons baking soda, 1 1/2 teaspoons ground cinnamon, 1 teaspoon nutmeg, 1/4 teaspoon cloves, 1/4 teaspoon ground ginger, 1/4 teaspoon salt
  • Add the dry ingredients to the wet ingredients and stir until just combined
  • Fold in the cranberries and chocolate chips (if you're including).
    1 1/4 cups cranberries, 1/3 cup chocolate chips
  • Cover and place the batter in the fridge to rest for 30 minutes.
  • Preheat your oven to 350 degrees and grease a 12 cup muffin pan or line with baking cups.
  • Evenly divide the batter between the muffin cups.
  • Bake at 350 degrees for 24-28 minutes or until a toothpick inserted into the center of a muffin comes out mostly clean with a few moist crumbs.
  • Cool for about 10 minutes before removing from the pan. Enjoy!

Notes

  • You can substitute brown sugar for the coconut sugar.
  • Store at room temperature for 3-5 days or freeze for 2-3 months.

Nutrition

Serving: 1muffin | Calories: 218kcal | Carbohydrates: 37g | Protein: 6g | Fat: 6g | Saturated Fat: 2g | Polyunsaturated Fat: 1g | Monounsaturated Fat: 1g | Trans Fat: 0.004g | Cholesterol: 42mg | Sodium: 231mg | Potassium: 236mg | Fiber: 4g | Sugar: 12g | Vitamin A: 5588IU | Vitamin C: 3mg | Calcium: 48mg | Iron: 2mg

If you tried these healthy pumpkin muffins, I’d love to hear how they turned out for you! Please make sure to come back and leave a comment and a ⭐️⭐️⭐️⭐️⭐️ rating.

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One Comment

  1. 5 stars
    These rich pumpkin muffins are a fall favorite around here! If you try them I think they’ll become a favorite in your home too!

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